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| Toxin Name |
Sphingomyelinase D (LiSicTox-αIA2bi) |
| Source Species |
Loxosceles intermedia |
| Toxin Group |
Sicaritoxin |
| Description |
Sphingomyelin phosphodiesterase D (EC 3.1.4.41), also known as sphingomyelinase D (SMase D), is a highly derived member of the glycerophosphodiester phosphodiesterase (GPPD) protein family. SMase D catalyzes the hydrolysis of sphingomyelin to form ceramide 1-phosphate and choline. It is also capable of cleaving lysophosphatidylcholine to release the pleiotropic lipid mediator lysophosphatidic acid. SMase D is found only in sicariid spiders, ixodid ticks, and Corynebacteria.
The 3D structure of SMase D comprises a distorted α/β (TIM-like) barrel. A disulfide bond (Cys52-Cys58 in LiSicTox-αIA2bi) that stabilizes the tip of the catalytic loop is conserved in all known sicariid SMases. A second disulfide bond is present in some but not all sicariid SMases. SMase D activity is magnesium-dependent.
SMase D is responsible for the dermonecrotic lesions and serious systemic effects (loxoscelism) that sometimes result from bites by spiders from the genera Loxosceles and Sicarius. In addition to being cytolytic, it has been proposed that SMase D may be neurotoxic to prey through indirect inhibition of ion channels. Although the North American brown recluse spider (Loxosceles reclusa) is perhaps the most well known sicariid spider, the most important species from a medical perspective are the South American spiders Loxosceles gaucho, Loxosceles intermedia (Mello-Leitão), and Loxosceles laeta, which together account for more than 3000 human envenomations per year. Several antivenoms are available but they are most effective when administered within 12 hours of envenomation.
The nomenclature used here is based on that proposed by Binford et al. (2009), which is derived from phylogenetic analyses showing that sicariid SMases can be grouped into two distinct clades, α and β. Major lineages within each clade are distinguished by Roman numerals and subgroups within each lineage are distinguished by uppercase letters. The generic name SicTox for sicariid SMases is derived from name Loxtox suggested by Kalapothakis et al. (2007) and takes account of the fact that these enzymes are found in the venom of sicariid spiders other than Loxosceles. |
| Discovered |
2007 |
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Sex: Female, Prosoma length: 4mm
Photo courtesy of Bastian Rast
Use of photo governed by creative
commons noncommercial license
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| This toxin last updated on Dec 10, 2009 |
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| Current Taxonomy |
Historic Taxonomy |
| Kingdom |
Animalia |
| Phylum |
Arthropoda |
| Class |
Arachnida |
| Order |
Araneae |
| Infra-order |
Araneomorphae |
| Family |
Sicariidae |
| Genus |
Loxosceles |
| Species |
intermedia |
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| Loxosceles intermedia |
| Loxosceles ornata |
| Loxosceles ornatus |
| Loxosceles spadicea |
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| Cytolytic |
| Dermonecrotic |
| Hemolytic |
| Molecular Target |
ED50 |
IC50 |
Kd |
Pharmacophore |
Comment |
| Sphingomyelinase D (EC 3.1.4.41) |
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| Original Deposition References |
Kalapothakis E., Chatzaki M, Gonçalves-Dornelas H., de Castro C.S., Silvestre F.G., Laborne F.V., de Moura J.F., Veiga S.S., Chávez-Olórtegu C., Granier C, Barbaro K.C.
Toxicon 50:938-946 (2007)
The Loxtox protein family in Loxosceles intermedia (Mello-Leitão) venom
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| Other References |
van Meeteren L.A., Frederiks F., Giepmans B.N.G., Fernandes Pedrosa M.F., Billington S.J., Jost B.H., Tambourgi D.V., Moolenaar W.H.
J. Biol. Chem. 279:10833-10836 (2004)
Spider and bacterial sphingomyelinases D target cellular lysophosphatidic acid receptors by hydrolyzing lysophosphatidylcholine
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Murakami M.T., Fernandes-Pedrosa M.F., Tambourgi D.V., Arni R.K.
J. Biol. Chem. 280:13658-13664 (2005)
Structural basis for metal ion coordination and the catalytic mechanism of sphingomyelinases D
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Murakami M.T., Fernandes-Pedrosa M.F., de Andrade S.A., Gabdoulkhakov A., Betzel C., Tambourgi D.V., Arni R.K.
Biochem. Biophys. Res. Commun. 342:323-329 (2006)
Structural insights into the catalytic mechanism of sphingomyelinases D and evolutionary relationship to glycerophosphodiester phosphodiesterases
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Pauli I., Puka J., Gubert I.C., Minozzo J.C.
Toxicon 48:123-137 (2006)
The efficacy of antivenom in loxoscelism treatment
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Swanson D.L., Vetter R.S.
Clin. Dermatol. 24:213-221 (2006)
Loxoscelism
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Binford G.J., Bodner M.R., Cordes M.H., Baldwin K.L., Rynerson M.R., Burns S.N., Zobel-Thropp P.A.
Mol. Biol. Evol. 26:547-566 (2009)
Molecular evolution, functional variation, and proposed nomenclature of the genefamily that includes sphingomyelinase D in sicariid spider venoms
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| Disulfide Bonds |
| Left Residue |
Right Residue |
Evidence |
| 52 |
58 |
By homology |
| 54 |
197 |
By homology |
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| Peptide Sequences |
>as:SphingomyelinaseD(LiSicTox-αIA2bi)|gb:ABU43329 Sphingomyelinase D (EC 3.1.4.41; LiSicTox-αIA2bi) from the spider Loxosceles intermedia MLPYIALILVCWSVLSQAAQTDVEGRADKRRPIWIMGHMVNAIAQIDEFVNLGANSIETD VSFDDNANPEYTYHGVPCDCGRSCLKWENFNDFLKGLRSATTPGNAKYQAKLILVVFDLK TGSLYDNQANEAGKKLAKNLLKHYWNNGNNGGRAYIVLSIPDLNHYPLIKGFKDQLTQDG HPELMDKVGHDFSGNDAIGDVGNAYKKAGISGHVWQSDGITNCLLRGLDRVKQAIANRDS GNGFINKVYYWTVDKRATTRDALDAGVDGVMTNYPDVITDVLNESAYKNKFRVASYEDNP WETFKK |
Full BLAST |
BLAST mature toxin only
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| mRNA Sequences |
>as:SphingomyelinaseD(LiSicTox-αIA2bi)|gb:EF535250 cDNA sequence for sphingomyelinase D (EC 3.1.4.41; LiSicTox-αIA2bi) from the spider Loxosceles intermedia ATGTTGCCGTACATTGCCTTAATCTTGGTGTGTTGGAGCGTCTTATCCCAGGCTGCCCAA ACAGATGTTGAGGGACGCGCGGATAAACGTCGACCCATATGGATCATGGGCCACATGGTG AACGCCATCGCTCAGATAGACGAGTTCGTGAACCTTGGAGCAAATTCCATCGAGACAGAC GTGTCTTTCGATGACAATGCTAATCCTGAGTACACTTATCACGGCGTTCCATGCGATTGT GGAAGGAGTTGTCTGAAATGGGAGAATTTCAACGATTTTCTCAAAGGCCTGCGAAGTGCC ACAACACCCGGTAATGCAAAGTATCAGGCAAAATTAATCTTAGTTGTTTTCGACTTAAAA ACGGGTAGTCTCTACGATAATCAAGCCAACGAAGCCGGAAAGAAATTGGCGAAAAATCTT CTAAAGCATTACTGGAACAATGGCAATAATGGTGGAAGAGCATACATAGTGTTATCGATT CCAGACCTTAATCATTATCCACTGATTAAGGGATTCAAAGACCAGCTTACACAGGACGGA CACCCAGAGTTGATGGACAAAGTTGGACATGACTTCTCCGGAAACGACGCCATCGGTGAC GTTGGGAATGCTTACAAGAAAGCCGGAATATCCGGCCATGTGTGGCAGAGCGACGGTATT ACCAACTGTTTACTGCGTGGTCTTGATCGTGTAAAGCAAGCTATTGCAAACAGAGATTCT GGAAACGGATTCATTAACAAAGTGTACTACTGGACAGTGGACAAGCGCGCAACGACCAGA GATGCACTTGATGCCGGAGTTGATGGTGTAATGACCAATTACCCAGATGTAATTACTGAT GTCCTCAACGAATCCGCTTACAAGAATAAATTTAGAGTTGCTTCATACGAGGACAATCCT TGGGAGACATTCAAGAAATAAATTCTGCTGGTTGGTTCTGTGCAAACTCATACCAAACTG AATTTCTCGGTTTTCATAGAACTTTGTTGGAACCAAATTGATACACACTATGGATGCGTT TAGCAAAATAGTGTTTGTTGTTATTGTGTACATGTTTAGAAAATGTATTTTTCCGCAATA AAATGTGAACCAAGTAAAAAAAAAAAAAAAAAAA |
Full BLAST
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| Synonym |
Type |
| Sphingomyelinase D (LiSicTox-αIA2bi) |
Recommended full name |
| SMase D (LiSicTox-αIA2bi) |
Recommended abbreviation |
| Loxtox i1 |
Synonym |
| Sphingomyelin phosphodiesterase D |
Synonym |
| SMase D |
Synonym (abbreviation) |
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